Models&Pathways:
Co-transcription/polyadenylation
Exon Splicing Enhancer
AAV5 Internal Polyadenylation
Chromotin/polyadenylation
Apoptosis pathway
Cell cycle
Checkpoint Signaling and DNA Repair
CD antigen expression (Myeloid & Lymphoid)
P53 Pathways
Models of Virus-indcued G2/M arrest (Virology Review, 2007)
Lee's ATR pathway, 2009

Interesting Reviews:
Virus&Apoptosis in vivo Review
SR Protein Review
Telomerase Review
Review on DNA Damage
Review on DNA Damage Response
Virus&DNA Damage
Review on Necrotic Death
Sullivan's review on Viral non-coding RNA in 2008
Sullivan's review on Viral non-coding RNA in 2014
Joan's review on Viral non-coding RNA in 2015

Apoptosis:
Stepwise Activation of BAX and BAK by tBID, BIM, and PUMA Initiates Mitochondrial Apoptosis
Genomic Analysis Reveals a Potential Role for Cell Cycle Perturbation in HCV-Mediated Apoptosis of Cultured Hepatocytes

AAV-induced DNA Damage:
Enhancement of UV-induced cytotoxicity by the adeno-associated virus replication proteins
Virus-mediated killing of cells that lack p53 activity
Viral Transport of DNA Damage That Mimics a Stalled Replication Fork
Host Cell DNA Repair Pathways in Adeno-Associated Viral Genome Processing
Chk1 Instability Is Coupled to Mitotic Cell Death of p53-deficient Cells in Response to Virus-induced DNA Damage Signaling
Processing of recombinant AAV genomes occurs in specific nuclear structures that overlap with foci of DNA-damage-response proteins
The Mre11/Rad50/Nbs1 Complex Limits Adeno-Associated Virus Transduction and Replication
Recombinant Adeno-Associated Viral Vectors Are Deficient in Provoking a DNA Damage Response
H2AX is required for cell cycle arrest via the p53/p21 pathway

Pavovirus-induced Cell Cycle Arrest:
Inhibition of S-phase progression by adeno-associated virus Rep78 protein is mediated by hypophosphorylated pRb
How adeno-associated virus Rep78 protein arrests cells completely in S phase
NS1- and Minute Virus of Mice-Induced Cell Cycle Arrest:Involvement of p53 and p21cip1
Human parvovirus B19 nonstructural protein (NS1) induces cell cycle arrest at G(1) phase
G2/M cell cycle arrest in the life of viruses

Pavovirus Replication Center:
The Rep Protein of Adeno-Associated Virus Type 2 Interacts with Single-Stranded DNA-Binding Proteins That Enhance Viral Replication
In Vivo Accumulation of Cyclin A and Cellular Replication Factors in Autonomous Parvovirus Minute Virus of Mice-Associated Replication Bodies

Pavovirus Reviews (any aspects):
Parvovirus RNA processing strategies
Parvoviral Host Range and Cell Entry Mechanisms
The Detection of Parvoviruses

Innate Immunity& (DNA) Viruses:
Innate immune DNA sensing pathways: STING, AIMII and the regulation of interferon production and inflammatory responses