The RNA World Website

Databases, Web Tools

Software

Books , Tutorials

Meetings

Miscellaneous

Search

Databases, Web Tools
Three-dimensional structures (coordinates and images)
Sequences, Secondary structures, Other
Web Tools
Software
  • CARD (RNA secondary structure drawing) 
  • COVE (RNA structure analysis using covariance models) 
  • DCSE (Sequence editor ) 
  • ERPIN (Easy RNA Profile IdentificatioN)
  • ESSA (RNA secondary structure analysis ) 
  • Mc-Sym (Molecular modeling using constraint satisfaction) 
  • MFOLD (RNA/DNA secondary structure prediction) 
  • NAB (Generation of models for unusual RNA and DNA) 
  • NAMOT (Nucleic Acid Modeling Tool) 
  • PatSearch (searches protein or nucleotide sequences in order to find a complex patterns including potential secondary structure elements [new]
  • PKNOTs (RNA pseudoknot prediction) 
  • QRNA (ncRNA genefinder) 
  • RNABOB (Pattern searching for RNA secondary structures) 
  • RNAdraw 
  • RNAMotif
  • RNA Movies (Visualizing RNA secondary structure spaces) 
  • RNAstructure (MS-Windows implemenatiion of the Zuker algorithm for RNA folding accompanied by additional tools) 
  • RnaViz (Secondary structure drawing of RNA) 
  • SStructView (RNA secondary structure Java applet ) 
  • STAR (STructure Analysis of RNA 
  • TRNASCAN-SE (tRNA detection in large-scale genome sequences) 
  • TRAFOR (Sequence file conversion) 
  • Vienna RNA Package (RNA secondary structure prediction and comparison) 
Books, Tutorials

Meetings
Miscellaneous
Search

If the information you need is not available via one of the links you can try 

or bibliographic databases like the

  • PubMed Retrieval System 

    (PubMed searches the 9 million citations in MEDLINE supplemented by pre-Medline citations which do not yet have MeSH index terms and by citations supplied electronically by publishers)

or combined bibliographic/sequence databases like

An increasing number of biological journals provide WWW access to full articles and additional search options. One example is the

More online journals can be found on the IMB Jena Journals page
The RNA World Website has been included in the Web 's Best Sites collection of the Encyclopedia Britannica. Search for RNA.
Databases, Web Tools

Software

Books , Tutorials

Meetings

Miscellaneous

Search

IMB Jena HomePage J. Sühnel (jsuehnel@imb-jena.de ) Biology and Computers Last update: October 23, 2002